Coronavirus circulated for months before first case was reported: modelling study

In a study published in Science, the researchers also note that their simulations suggest that the mutating virus dies out naturally more than three-quarters of the time without causing an epidemic.

Using molecular dating tools and epidemiological simulations, researchers have estimated that the SARS-CoV-2 virus was likely circulating undetected for at most two months before the first human cases of Covid-19 were described in Wuhan, China in late December 2019. In a study published in Science, the researchers also note that their simulations suggest that the mutating virus dies out naturally more than three-quarters of the time without causing an epidemic.

Newsletter | Click to get the day’s best explainers in your inbox

The study was conducted by researchers from University of California San Diego (UCSD) School of Medicine, the University of Arizona, and Illumina Inc. “Our study was designed to answer the question of how long could SARS-CoV-2 have circulated in China before it was discovered. To answer this question, we combined three important pieces of information: a detailed understanding of how SARS-CoV-2 spread in Wuhan before the lockdown, the genetic diversity of the virus in China, and reports of the earliest cases of Covid-19 in China. By combining these disparate lines of evidence, we were able to put an upper limit of mid-October 2019 for when SARS-CoV-2 started circulating in Hubei province,” senior author Joel O Wertheim said in a statement from UCSD School of Medicine.

Cases of Covid-19 were first reported in December 2019 in Wuhan. The UCSD statement also referred to regional newspaper reports that suggest Covid-19 diagnoses in Hubei date back to at least November 17, 2019, suggesting the virus was already actively circulating when Chinese authorities enacted public health measures.

In the new study, researchers used molecular clock evolutionary analyses to try to home in on when the first, or index, case of SARS-CoV-2 occurred. “Molecular clock” is a term for a technique that uses the mutation rate of genes to deduce when two or more life forms diverged — in this case, when the common ancestor of all variants of SARS-CoV-2 existed, estimated in this study to as early as mid-November 2019.

Based on this work, the researchers estimate that the median number of persons infected with SARS-CoV-2 in China was less than one until November 4, 2019. Thirteen days later, it was four individuals, and just nine on December 1, 2019.

The authors modelled how the SARS-CoV-2 virus may have behaved during the initial outbreak and early days of the pandemic when it was largely an unknown entity and the scope of the public health threat not yet fully realised. In just 29.7% of these simulations was the virus able to create self-sustaining epidemics. In the other 70.3%, the virus infected relatively few persons before dying out. The average failed epidemic ended just eight days after the index case.

Source: University of California San Diego

Source: Read Full Article